Ontologies
SO
Sequence Types and Features Ontology (SO)
OWL
No license
Last submission date November 20, 2024
Summary
Classes
Properties
Instances
Notes
Mappings
Widgets
Sparql

General information

A structured controlled vocabulary for sequence annotation, for the exchange of annotation data and for the description of sequence objects in databases. See more...
Initial created on November 20, 2024. For additional information, contact Karen Eilbeck (Pi) (karen.eilbeck@genetics.utah.edu) and Colin Batchelor (For Rna Related Questions) (colin@tantallon.org.uk) and Barry Moore (Software Developer) (barry.moore@genetics.utah.edu).

Languages

Categories and subjects

Gene
Genplant
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Metrics

Submissions

Identifiers

URI

http://purl.obolibrary.org/obo/so.owl
http://purl.obolibrary.org/obo/so.owl

Version IRI

http://purl.obolibrary.org/obo/so/2024-11-18/so.owl
http://purl.obolibrary.org/obo/so/2024-11-18/so.owl

StagePortal URI

https://stageportal.lirmm.fr/ontologies/SO
https://stageportal.lirmm.fr/ontologies/SO

Dates

Creation date

November 20, 2024

Submission date

November 20, 2024

Persons and organizations

Contact

Karen Eilbeck (PI)
Colin Batchelor (for RNA related questions)
Barry Moore (Software Developer)

Endorsed by

RDA WDI

Other links

Projects and usage information

Methodology and provenance

The fields Knowledge representation paradigm, Engineering methodology, Created with, Accrual method, Accrual periodicity... are empty

Community

Repository

https://github.com/The-Sequence-Ontology/SO-Ontologies
https://github.com/The-Sequence-Ontology/SO-Ontologies

Bug database

https://github.com/The-Sequence-Ontology/SO-Ontologies/issues
https://github.com/The-Sequence-Ontology/SO-Ontologies/issues

Groups

Consortium of Agricultural Biological Databases
OBO Foundry
Wheat Data Interoperability working group

Content

Root of obsolete branch

http://www.geneontology.org/formats/oboInOwl#ObsoleteClass
http://www.geneontology.org/formats/oboInOwl#ObsoleteClass

Identifier pattern

http://purl.obolibrary.org/obo/SO_[0-9]{7}
http://purl.obolibrary.org/obo/SO_[0-9]{7}

Preferred namespace URI

http://purl.obolibrary.org/obo/SO_
http://purl.obolibrary.org/obo/SO_

Preferred namespace prefix

sequence

Example of resource

http://purl.obolibrary.org/obo/SO_0001673
http://purl.obolibrary.org/obo/SO_0001673

Visits

Views of SO

No views available for SO.