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Ontologies
GFVO
Genomic Feature and Variation Ontology (GFVO)
OWL
No license
Last submission date June 30, 2020

General information

The Genomic Feature and Variation Ontology (GFVO) is modeled to represent genomic data using the Resource Description Format (RDF). It is captures the contents of data files that adhere to the Generic Feature Format Version 3 (GFF3, http://www.sequenceontology.org/resources/gff3.html), the General Transfer Format (GTF, http://mblab.wustl.edu/GTF22.html), the Genome Variation Format Version 1 (GVF, http://www.sequenceontology.org/resources/gvf.html), and the Variant Call Format (VCF, http://vcftools.sourceforge.net/specs.html). The creation of the ontology was inspired by previous work of Robert Hoehndorf on RDF2OWL (http://code.google.com/p/rdf2owl).
Initial created on June 22, 2014. For additional information, contact Joachim Baran (kim@codamono.com).

Languages



Metrics

Ontology relations network

View of (bpm:viewOf) ×
Imports(omv:useImports) ×
Has equivalences with(door:isAlignedTo) ×
Generally related to or relies on(door:ontologyRelatedTo) ×
Backward compatible(omv:isBackwardCompatibleWith) ×
Incompatible(omv:isIncompatibleWith) ×
Comes from the same domain(door:comesFromTheSameDomain) ×
Similar to(door:similarTo) ×
Specializes(door:explanationEvolution) ×
Generalizes(voaf:generalizes) ×
Disparate modelling with(door:hasDisparateModelling) ×
Has part (has views)(dct:hasPart) ×
Used by(voaf:usedBy) ×
Translation(schema:workTranslation) ×
Translation of(schema:translationOfWork) ×

Submissions

Identifiers

URI

http://www.biointerchange.org/gfvo#
http://www.biointerchange.org/gfvo#
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Other identifier

https://doi.org/10.7717/peerj.933
https://doi.org/10.7717/peerj.933
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StagePortal URI

https://stageportal.lirmm.fr/ontologies/GFVO
https://stageportal.lirmm.fr/ontologies/GFVO
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Visits

Views of GFVO

No views available for GFVO.