BioportalWebUi

URI*	http://purl.obolibrary.org/obo/OntoBiotope.owl http://purl.obolibrary.org/obo/OntoBiotope.owl
Contact*	Claire Nédellec (claire.nedellec@inrae.fr)
Rights holder	INRA
Submission date	December 1, 2021
Deprecated	false See more...
Description*	OntoBiotope is an ontology of microorganism habitats, phenotypes and use. Its modeling principle and its lexicon reflect the biotope classification used by biologists to describe microorganism isolation sites, phenotypes and uses. OntoBiotope is developed and maintained by the Bibliome group of MaIAGE lab and microbiologists from INRAE (French National Research Institute for Agriculture, Food and Environment) from all fields of applied microbiology. OntoBiotope classes are used in the Bacteria Biotope reference dataset of BioNLP shared task to annotate the habitats and phenotype entities. It is also used to index the data of the Omnicrobe DataBase See more...
Designed for task (as defined by OMV).	http://omv.ontoware.org/2005/05/ontology#AnnotationTask http://omv.ontoware.org/2005/05/ontology#AnnotationTask
Endorsed by	INRAE
Example of resource	http://purl.obolibrary.org/obo/OBT_001929 See more...
Funded or sponsored by	INRAE
Creator	Claire Nédellec
Subject	http://aims.fao.org/aos/agrovoc/c_925, http://aims.fao.org/aos/agrovoc/c_5776, http://aims.fao.org/aos/agrovoc/c_3456, http://aims.fao.org/aos/agrovoc/c_4807 See more...
Formality level	http://w3id.org/nkos/nkostype#ontology http://w3id.org/nkos/nkostype#ontology
License
Representation language*	OBO See more...
Syntax	http://purl.obolibrary.org/obo/oboformat/spec.html http://purl.obolibrary.org/obo/oboformat/spec.html
Prior version	https://data.agroportal.lirmm.fr/ontologies/ONTOBIOTOPE/submissions/7 https://data.agroportal.lirmm.fr/ontologies/ONTOBIOTOPE/submissions/7
Other identifier	http://doi.org/10.15454/1.4382640528105164E12 http://doi.org/10.15454/1.4382640528105164E12
Indexed or included in catalog or repository	http://lovinra.inra.fr/2015/07/30/ontobiotope/ http://lovinra.inra.fr/2015/07/30/ontobiotope/ https://agroportal.lirmm.fr/ https://agroportal.lirmm.fr/ https://vest.agrisemantics.org/content/ontobiotope https://vest.agrisemantics.org/content/ontobiotope
Generic type	http://omv.ontoware.org/2005/05/ontology#DomainOntology http://omv.ontoware.org/2005/05/ontology#DomainOntology
Keywords	information extraction, corpus annotation, ontology building, biology, genetics, ecology, epidemiology, phenotypes, habitats, microorganisms See more...
Known usage	OntoBiotope is the ontology used in the Omnicrobe (previously called Florilege) to index habitats, phenotypes and uses of large collections of data about microbes. See more...
Logo	http://institut.inra.fr/extension/itkinra/design/inra/images/inra_instit-logo.gif http://institut.inra.fr/extension/itkinra/design/inra/images/inra_instit-logo.gif
Modification date	October 22, 2021
Natural language
Notes	OntoBiotope is developed and maintained by MaIAGE lab (INRAE) with the contribution of INRAE microbiologists. See more...
Preferred namespace prefix	obt See more...
Preferred namespace URI	http://purl.obolibrary.org/ http://purl.obolibrary.org/
Bibliographic reference	https://arxiv.org/abs/1805.04107 https://arxiv.org/abs/1805.04107
Publisher	INRAE
Creation date*	March 1, 2019
Status*	production See more...
URI Lookup Endpoint	http://data.agroportal.lirmm.fr/search?ontologies=ONTOBIOTOPE&require_exact_match=true&q= http://data.agroportal.lirmm.fr/search?ontologies=ONTOBIOTOPE&require_exact_match=true&q=
Identifier pattern	http://purl.obolibrary.org/obo/OBT_[0-9]{6} See more...
Created with	OBO-Edit 2.3.1 See more... http://oboedit.org/ See more...
Version information	Oct 2021 See more...

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