URI*
http://purl.obolibrary.org/obo/OntoBiotope.owl
http://purl.obolibrary.org/obo/OntoBiotope.owl
Contact*
Claire Nédellec (claire.nedellec@inrae.fr)
Rights holder
INRA
Submission date
December 1, 2021
Deprecated
false See more...
Description*
OntoBiotope is an ontology of microorganism habitats, phenotypes and use. Its modeling principle and its lexicon reflect the biotope classification used by biologists to describe microorganism isolation sites, phenotypes and uses. OntoBiotope is developed and maintained by the Bibliome group of MaIAGE lab and microbiologists from INRAE (French National Research Institute for Agriculture, Food and Environment) from all fields of applied microbiology. OntoBiotope classes are used in the Bacteria Biotope reference dataset of BioNLP shared task to annotate the habitats and phenotype entities. It is also used to index the data of the Omnicrobe DataBase See more...
Designed for task (as defined by OMV).
http://omv.ontoware.org/2005/05/ontology#AnnotationTask
http://omv.ontoware.org/2005/05/ontology#AnnotationTask
Endorsed by
INRAE
Example of resource
http://purl.obolibrary.org/obo/OBT_001929 See more...
Funded or sponsored by
INRAE
Creator
Claire Nédellec
Subject
http://aims.fao.org/aos/agrovoc/c_925, http://aims.fao.org/aos/agrovoc/c_5776, http://aims.fao.org/aos/agrovoc/c_3456, http://aims.fao.org/aos/agrovoc/c_4807 See more...
Formality level
http://w3id.org/nkos/nkostype#ontology
http://w3id.org/nkos/nkostype#ontology
License
Creative Commons License
Representation language*
OBO See more...
Syntax
http://purl.obolibrary.org/obo/oboformat/spec.html
http://purl.obolibrary.org/obo/oboformat/spec.html
Prior version
https://data.agroportal.lirmm.fr/ontologies/ONTOBIOTOPE/submissions/7
https://data.agroportal.lirmm.fr/ontologies/ONTOBIOTOPE/submissions/7
Other identifier
http://doi.org/10.15454/1.4382640528105164E12
http://doi.org/10.15454/1.4382640528105164E12
Indexed or included in catalog or repository
http://lovinra.inra.fr/2015/07/30/ontobiotope/
http://lovinra.inra.fr/2015/07/30/ontobiotope/
https://agroportal.lirmm.fr/
https://agroportal.lirmm.fr/
https://vest.agrisemantics.org/content/ontobiotope
https://vest.agrisemantics.org/content/ontobiotope
Generic type
http://omv.ontoware.org/2005/05/ontology#DomainOntology
http://omv.ontoware.org/2005/05/ontology#DomainOntology
Keywords
information extraction, corpus annotation, ontology building, biology, genetics, ecology, epidemiology, phenotypes, habitats, microorganisms See more...
Known usage
OntoBiotope is the ontology used in the Omnicrobe (previously called Florilege) to index habitats, phenotypes and uses of large collections of data about microbes. See more...
Logo
http://institut.inra.fr/extension/itkinra/design/inra/images/inra_instit-logo.gif
http://institut.inra.fr/extension/itkinra/design/inra/images/inra_instit-logo.gif
Modification date
October 22, 2021
Natural language
Notes
OntoBiotope is developed and maintained by MaIAGE lab (INRAE) with the contribution of INRAE microbiologists. See more...
Preferred namespace prefix
obt See more...
Preferred namespace URI
http://purl.obolibrary.org/
http://purl.obolibrary.org/
Bibliographic reference
https://arxiv.org/abs/1805.04107
https://arxiv.org/abs/1805.04107
Publisher
INRAE
Creation date*
March 1, 2019
Status*
production See more...
URI Lookup Endpoint
http://data.agroportal.lirmm.fr/search?ontologies=ONTOBIOTOPE&require_exact_match=true&q=
http://data.agroportal.lirmm.fr/search?ontologies=ONTOBIOTOPE&require_exact_match=true&q=
Identifier pattern
http://purl.obolibrary.org/obo/OBT_[0-9]{6} See more...
Created with
OBO-Edit 2.3.1 See more...
http://oboedit.org/ See more...
Version information
Oct 2021 See more...

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