URI*
http://biohackathon.org/resource/faldo
http://biohackathon.org/resource/faldo
Bug database
https://github.com/JervenBolleman/FALDO/issues
https://github.com/JervenBolleman/FALDO/issues
Contact*
Jerven Bolleman (jerven.bolleman@isb-sib.ch)
Submission date
December 13, 2018
Depiction
https://static-content.springer.com/image/art%3A10.1186%2Fs13326-016-0067-z/MediaObjects/13326_2016_67_Fig1_HTML.gif
https://static-content.springer.com/image/art%3A10.1186%2Fs13326-016-0067-z/MediaObjects/13326_2016_67_Fig1_HTML.gif
Deprecated
false See more...
Description*
FALDO is the Feature Annotation Location Description Ontology. It is a simple ontology to describe sequence feature positions and regions as found in GFF3, DBBJ, EMBL, GenBank files, UniProt, and many other bioinformatics resources. The aim of this ontology is to describe the position of a sequence region or a feature. It does not aim to describe features or regions itself, but instead depends on resources such as the Sequence Ontology or the UniProt core ontolgy. See more...
Documentation
https://github.com/JervenBolleman/FALDO
https://github.com/JervenBolleman/FALDO
Endorsed by
RDA WDI
Example of resource
http://biohackathon.org/resource/faldo#CollectionOfRegions See more...
Creator
Michel Dumontier
Christopher Mungall
Jerven T. Bolleman
Francesco Strozzi
Joachim Baran
Raoul J. P. Bonnal
Robert Buels
Robert Hoehndorf
Takatomo Fujisawa
Toshiaki Katayama
Peter J. A. Cock
Formality level
http://w3id.org/nkos/nkostype#ontology
http://w3id.org/nkos/nkostype#ontology
License
http://creativecommons.org/publicdomain/zero/1.0/
Representation language*
OWL See more...
Syntax
http://www.w3.org/ns/formats/RDF_XML
http://www.w3.org/ns/formats/RDF_XML
Prior version
https://data.agroportal.lirmm.fr/ontologies/FALDO/submissions/1
https://data.agroportal.lirmm.fr/ontologies/FALDO/submissions/1
Homepage
http://aber-owl.net/ontology/FALDO/#/
http://aber-owl.net/ontology/FALDO/#/
Indexed or included in catalog or repository
http://aber-owl.net/ontology/FALDO
http://aber-owl.net/ontology/FALDO
https://agroportal.lirmm.fr/
https://agroportal.lirmm.fr/
https://fairsharing.org/bsg-s000692
https://fairsharing.org/bsg-s000692
https://vest.agrisemantics.org/content/feature-annotation-location-description-ontology
https://vest.agrisemantics.org/content/feature-annotation-location-description-ontology
Generic type
http://omv.ontoware.org/2005/05/ontology#DomainOntology
http://omv.ontoware.org/2005/05/ontology#DomainOntology
Keywords
sequence ontology, annotation, data integration, sequence feature See more...
Known usage
FALDO can be used to describe nucleotide features in sequence records, protein annotations, and glycan binding sites, among other features in coordinate systems of the aforementioned “omics” areas. See more...
More permissions
https://github.com/JervenBolleman/FALDO/blob/master/LICENSE See more...
Natural language
Preferred namespace prefix
faldo See more...
Access URL
https://raw.githubusercontent.com/JervenBolleman/FALDO/master/faldo.ttl
https://raw.githubusercontent.com/JervenBolleman/FALDO/master/faldo.ttl
Creation date*
December 13, 2018
Repository
https://github.com/OBF/FALDO
https://github.com/OBF/FALDO
Status*
production See more...
URI Lookup Endpoint
http://data.agroportal.lirmm.fr/search?ontologies=FALDO&require_exact_match=true&q=
http://data.agroportal.lirmm.fr/search?ontologies=FALDO&require_exact_match=true&q=
Version information
Created at the Biohackathon 2012 and 2013 See more...

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