URI*
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http://www.semanticweb.org/BiPON
http://www.semanticweb.org/BiPON
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Contact*
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Anne Goelzer (anne.goelzer@inrae.fr)
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Object creation date property
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http://purl.org/dc/elements/1.1/created
http://purl.org/dc/elements/1.1/created
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Submission date
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April 3, 2024
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Deprecated
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false
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Description*
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BiPON is an ontology permitting a multi-scale systemic representation of bacterial cellular processes and the coupling to their mathematical models. BiPON is further composed of two sub- ontologies, bioBiPON and modelBiPON. bioBiPON aims at organizing the systemic description of biological information while modelBiPON aims at describing the mathematical models (including parameters) associated to each biological process.
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License
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Representation language*
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OWL
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Indexed or included in catalog or repository
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https://bioportal.bioontology.org
https://bioportal.bioontology.org
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Modification date
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November 9, 2017
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Object modification date property
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http://purl.org/dc/elements/1.1/modified
http://purl.org/dc/elements/1.1/modified
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Notes
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BiPON
1. Copyright of ontology
The ontology was created jointly by the BioSys group at the research unit of Applied mathematics and computer science
from genomes to the environment (MaIAGE) of the Institut National
de la Recherche Agronomique (INRA) France and by the group Bioinformatics of the Laboratoire de recherche en informatique (LRI) of the Université Paris-Sud/CNRS, France.
INRA and Université Paris-Sud own the copyright of the ontology BiPON.
2. License terms
The ontology BiPON is licensed under the Creative Commons
Attribution 4.0 Unported (CC BY 4.0) license. To view a
copy of this license, visit http://creativecommons.org/licenses/by/4.0/
or send a letter to Creative Commons, 444 Castro Street, Suite 900,
Mountain View, California, 94041, USA.
3. Notice
This product contains references to classes of the Gene Ontology (GO) (http://geneontology.org/) developed by the Gene Ontology consortium,
licensed under the terms Creative Commons Attribution 4.0 Unported license (https://creativecommons.org/licenses/by/4.0/).
This product contains references to classes of the Chemical Entities of Biological Interest (ChEBI) (https://www.ebi.ac.uk/chebi/init.do) developed by the ChEBI consortium.
This product contains references to classes of the Sequence Ontology (SO) (http://www.sequenceontology.org/) developed by the SO consortium and are freely reusable.
This product contains references to classes of the Systems Biology Ontology (SBO) (http://www.ebi.ac.uk/sbo/main/) developed by the SBO consortium,
licensed under the terms of Artistic License 2.0 (https://opensource.org/licenses/artistic-license-2.0.php).
This product contains references to properties of the Relation Ontology (RO) (http://www.obofoundry.org/ontology/ro.html) developed by the OBO foundry,
licensed under the terms Creative Commons Attribution 3.0 Unported License (https://creativecommons.org/licenses/by/3.0/).
This product contains references to properties of the Basic Formal Ontology (BFO) (http://ifomis.uni-saarland.de/bfo/) developed by the BFO consortium,
licensed under the terms Creative Commons Attribution 3.0 Unported License (https://creativecommons.org/licenses/by/3.0/).
4. Contact
For questions and remarks concerning BiPON:
Anne Goelzer
Anne.Goelzer@inra.fr
See more...
BiPON
1. Copyright of ontology
The ontology was created jointly by the BioSys group at the research unit of Applied mathematics and computer science
from genomes to the environment (MaIAGE) of the Institut National
de la Recherche Agronomique (INRA) France and by the group Bioinformatics of the Laboratoire de recherche en informatique (LRI) of the Université Paris-Sud/CNRS, France.
INRA and Université Paris-Sud own the copyright of the ontology BiPON.
2. License terms
The ontology BiPON is licensed under the Creative Commons
Attribution 4.0 Unported (CC BY 4.0) license. To view a
copy of this license, visit http://creativecommons.org/licenses/by/4.0/
or send a letter to Creative Commons, 444 Castro Street, Suite 900,
Mountain View, California, 94041, USA.
3. Notice
This product contains references to classes of the Gene Ontology (GO) (http://geneontology.org/) developed by the Gene Ontology consortium,
licensed under the terms Creative Commons Attribution 4.0 Unported license (https://creativecommons.org/licenses/by/4.0/).
This product contains references to classes of the Chemical Entities of Biological Interest (ChEBI) (https://www.ebi.ac.uk/chebi/init.do) developed by the ChEBI consortium.
This product contains references to classes of the Sequence Ontology (SO) (http://www.sequenceontology.org/) developed by the SO consortium and are freely reusable.
This product contains references to classes of the Systems Biology Ontology (SBO) (http://www.ebi.ac.uk/sbo/main/) developed by the SBO consortium,
licensed under the terms of Artistic License 2.0 (https://opensource.org/licenses/artistic-license-2.0.php).
This product contains references to properties of the Relation Ontology (RO) (http://www.obofoundry.org/ontology/ro.html) developed by the OBO foundry,
licensed under the terms Creative Commons Attribution 3.0 Unported License (https://creativecommons.org/licenses/by/3.0/).
This product contains references to properties of the Basic Formal Ontology (BFO) (http://ifomis.uni-saarland.de/bfo/) developed by the BFO consortium,
licensed under the terms Creative Commons Attribution 3.0 Unported License (https://creativecommons.org/licenses/by/3.0/).
4. Contact
For questions and remarks concerning BiPON:
Anne Goelzer
Anne.Goelzer@inra.fr
See more...
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Root of obsolete branch
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http://www.geneontology.org/formats/oboInOwl#ObsoleteClass
http://www.geneontology.org/formats/oboInOwl#ObsoleteClass
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Preferred namespace prefix
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bipon
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Preferred namespace URI
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http://www.semanticweb.org/BiPON/
http://www.semanticweb.org/BiPON/
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Creation date*
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May 4, 2017
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Status*
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production
See more...
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URI Lookup Endpoint
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https://data.agroportal.lirmm.fr/search?ontologies=BIPON&require_exact_match=true&q=
https://data.agroportal.lirmm.fr/search?ontologies=BIPON&require_exact_match=true&q=
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Identifier pattern
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http://www.semanticweb.org/BiPON/BiPON_[0-9]{8}
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Version information
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2017-11-08-bis
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